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PattRun - A Bayesian Decomposition Utility


PattRun - A front-end and visualization program that provides a convenient interface for running Bayesian Decomposition and for viewing the results. The program allows the user to read tab-delimited files for data, uncertainty (optional), class membership (optional), and coregulation (optional), and produces output tab-delimited files if desired. The source code of PattRun is released under the GNU general public (GPL). PattRun is included in the PattTools directory when downloaded.

Platforms compatibility:

Platforms: (Windows, Mac OS X, Solaris) Linux coming soon!

Download Procedure:

  1. Download the Materials Transfer Agreement (MTA)
  2. Read and understand the form
  3. Complete the top portion of the MTA with your:
    • Name
    • Affiliation
    • Address
  4. Sign the form. Be sure to include an e-mail address.
  5. FAX the completed form to Fox Chase Cancer Center, as described on the MTA:
          Fox Chase Cancer Center,
          Attn: Sinoula Apostolou,
          FAX: 215-728-2513
  6. Upon acceptance of the completed MTA you will receive by e-mail a user name and password to access the Bayesian Decomposition download page.

    If you do not receive information for access to our download page within two (2) weeks please contact us.
  7. Once you have that software, you are ready to download the PattRun:
    • MacOS X G4, Windows, and Solaris - (Download)
    • Win, Mac OS X G4/G5 (Intel), and Solaris - (Download)


Contact Information:

Michael Ochs
Oncology Biostatistics and Bioinformatics
The Sidney Kimmel Cancer Center 
  at Johns Hopkins
email: mfo@jhu.edu